Legal notices

GPDE (Griss Proteomics Database Engine) >> A biological view on PRIDE

Copyright (C) 2008, 2009, 2010 Johannes Griss -

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.

You should have received a copy of the GNU Affero General Public License along with this program, in the file "AGPL.txt". If not, see http://www.gnu.org/licenses/.

IMPORTANT:
You are required to keep these "Appropriate Legal Notices" intact as specified in AGPL3 section 5(d) and 7(b). Also, you need to keep an convenient and prominently visible feature that displays these notices, as defined in AGPL3 section 0.

Futhermore, every webpage produced by this software must display the message "powered by the Griss Proteomics Database Engine (GPDE) Copyright 2008, 2009, 2010 Johannes Griss" together with a link to the original GPDE project page http://gpde.sourceforge.net as specified in AGPL3 sections 4, 7(b) and 7(c). In case you modified the original version of this program this must clearly be stated after the above mentioned notice (see AGPL section 7(c)).

You are required to make sure, that this web application provides a way for users to get its source. The original source is available at http://gpde.sourceforge.net.

If you modify this program, your modified version must prominently offer all users interacting with it an opportunity to receive the source of your modified version by providing access to it from a network server at no charge, through some standard or customary means of facilitating copying of software, as required by AGPL3 section 13. The interface could display a "Source" link that leads users to an archive of the code.

Software used by the GPDE:

The GPDE uses icons from the "Dropline Neu!" GNOME theme create by Silvestre Herrera which are released under the GNU GPL license and available at http://art.gnome.org/themes/icon. These icons are identified by a preceeding "gnu_" in their filename.

Services used by the GPDE:

The GPDE uses the UniProt Blast service to blast all peptides as well as the UniProt accession mapping system to translate between different accession systems. Both services are available at http://www.uniprot.org.

Terms of use

Use of data for publication

If you like to use the here presented data for your own publication, please cite the papers returned by the "get references" function. This function is only available in the "cell view". If you only want to use a certain protein entry please contact us on which papers to cite.
In case of any questions do not hesitate to send us an e-mail.

GPDE

For information on the GPDE please refer to the "Legal notices" or the "GPDE project page" at the bottom of the page.

Contact

Christopher Gerner, Ph.D.

mail:
phone: 43 - 1 - 4277 - 65230

Department of Medicine I
Institute of Cancer Research

Medical University of Vienna
Borschkegasse 8a
1090 Vienna
Austria

References

Data associated

Mohr T, Haudek VJ, Gundacker NC, Slany A, Wimmer H, Wagner O, Micksche M, and Gerner C. Cytoplasmatic Proteome and Secretome Profiles of Angiogenic and Inflammatory Activated Human Umbilical Vein Endothelial Cells (HUVEC). Proteomics - Clinical Applications(submitted) 2009

Slany A, Haudek VJ, Zwickl H, Gundacker NC, Grusch M, Weiss T, Seir K, Rodgarkia-Dara C, Hellerbrand C, and Gerner C. Cell Characterization by Proteome Profiling Applied to Primary Hepatocytes and Hepatocyte Cell Lines Hep-G2 and Hep-3B. J Proteome Res. 2009

Haudek VJ, Slany A, Gundacker NC, Wimmer H, Drach J, and Gerner C. Proteome Maps of the Main Human Peripheral Blood Constituents. J Proteome Res. 2009

Gundacker NC, Haudek VJ, Wimmer H, Slany A, Bochkov V, Zielinski C, Wagner O, Stöckl J, and Gerner C. Cytoplasmatic proteome and secretome profiles of differently stimulated human dendritic cells. J Proteome Res 2009;8(6): 2799-811 (pubmed)

Wimmer H, Gundacker NC, Griss J, Haudek VJ, Stättner S, Mohr T, Zwickl H, Paulitschke V, Baron DM, Trittner W, Kubicek M, Bayer E, Slany A, and Gerner C. Introducing the CPL/MUW proteome database: interpretation of human liver and liver cancer proteome profiles by referring to isolated primary cells. Electrophoresis 2009;30(12): 2076-89 (pubmed)

Lorenz O, Parzefall W, Kainzbauer E, Wimmer H, Grasl-Kraupp B, Gerner C, and Schulte-Hermann R. Proteomics Reveals Acute Pro-inflammatory and Protective Responses in Rat Kupffer Cells and Hepatocytes after Chemical Initiation of Liver Cancer and after LPS and Il-6. Proteomcs Clin. Appl. 2009

Paulitschke V, Kunstfeld R, Mohr T, Slany A, Micksche M, Drach J, Zielinski C, Pehamberger H, and Gerner C. Entering a new era of rational biomarker discovery for early detection of melanoma metastases: secretome analysis of associated stroma cells. J Proteome Res 2009;8(5): 2501-10 (pubmed)

Slany A, Haudek VJ, Gundacker NC, Griss J, Mohr T, Wimmer H, Eisenbauer M, Elbling L, and Gerner C. Introducing a new parameter for quality control of proteome profiles: consideration of commonly expressed proteins. Electrophoresis 2009;30(8): 1306-28 (pubmed)

Haudek VJ, Gundacker NC, Slany A, Wimmer H, Bayer E, Pablé K, and Gerner C. Consequences of acute and chronic oxidative stress upon the expression pattern of proteins in peripheral blood mononuclear cells. J Proteome Res 2008;7(12): 5138-47 (pubmed)

GPDE associated

Griss J, Gerner C. GPDE: a Biological View on PRIDE. J Proteomics Bioinform 2009;2: 167-174 doi:10.4172/jpb.1000074