Key-Publications (# equal contribution):

Rindler K*, Bauer WM*, Jonak C, Wielscher M, Shaw LE, Rojahn TB, Thaler FM, Porkert S, Simonitsch-Klupp I, Weninger W, Mayerhoefer ME, Farlik M* and Brunner PM* (2021) Single-Cell RNA Sequencing Reveals Tissue Compartment-Specific Plasticity of Mycosis Fungoides Tumor Cells. Frontiers in Immunology 12:666935. doi: 10.3389/fimmu.2021.666935

Stary V, Pandey R V, Strobl J, Kleissl L, Starlinger P, Pereyra D, Weninger W, Fischer G F, Bock C, Farlik M# & Stary G# (2020) A discrete subset of epigenetically primed human NK cells mediates antigen-specific immune responses. Science Immunology 5 (52) DOI: 10.1126/sciimmunol.aba6232

Marquina-Sanchez, B.#, Fortelny, N.#, Farlik, M.#, Vieira, A., Collombat, P., Bock, C., & Kubicek, S. (2020). Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets. Genome Biology, 21(1), 106–22.

Halbritter, F.#, Farlik, M.#, Schwentner, R., Jug, G., Fortelny, N., Schnoller, T., Pisa, H., Schuster, L.C., Reinprecht, A., Czech, T., Gojo. J., Holter. W., Minkov, M., Bauer, W.M., Simonitsch-Klupp, I., Bock. C. & Hutter, C. (2019). Epigenomics and Single-Cell Sequencing Define a Developmental Hierarchy in Langerhans Cell Histiocytosis. Cancer Discovery, CD–19–0138

Farlik, M. #, Halbritter, F. #, Müller, F. #, Choudry, F. A., Ebert, P., Klughammer J., Farrow S., Santoro A., Ciaurro V., Mathur A., Uppal R., Stunnenberg H.G., Ouwehand W. H., Laurenti E., Lengauer T., Frontini M.^# & Bock C^#. (2016). DNA Methylation Dynamics of Human Hematopoietic Stem Cell Differentiation. Cell Stem Cell, 19(6), 808–822.

Mass, E#, Ballesteros, I#, Farlik, M#, Halbritter, F#, Gunther, P#, Crozet, L, Jacome-Galarz, C.E., Händler C., Klughammer J., Kobayashi Y., Gomez-Perdiguero E., Schultze J.L., Beyer M.^#, Bock C.^# & Geissmann F.^# (2016). Specification of tissue-resident macrophages during organogenesis. Science, 10.1126/science.aaf4238.

Farlik, M.#, Sheffield, N. C#., Nuzzo, A., Datlinger, P., Schönegger, A., Klughammer, J., & Bock, C. (2015). Single-Cell DNA Methylome Sequencing and Bioinformatic Inference of Epigenomic Cell-State Dynamics. Cell Reports; 10.1016/j.celrep.2015.02.001

Li, J^#, Klughammer, J^#, Farlik, M^#, Penz, T^#, Spittler, A, Barbieux, C, Berishvili, E, Bock, C, Kubicek, S (2016). Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes. EMBO Reports, 10.15252/embr.201540946.

Farlik, M., Rapp, B., Marié, I., Levy, D. E., Jamieson, A. M., & Decker, T. (2012). Contribution of a TBK1-IRF7 pathway to IFN-γ-induced gene expression. Molecular and cellular biology; 10.1128/MCB.06021-11.

Farlik, M., Reutterer, B., Schindler, C., Greten, F., Vogl, C., Müller, M., and Decker, T. (2010). Nonconventional Initiation Complex Assembly by STAT and NF-kappaB Transcription Factors Regulates Nitric Oxide Synthase Expression. Immunity; 10.1016/j.immuni.2010.07.001