Detail

Keywords

Gene Regulatory Networks; Microbial Interactions

Research group(s)

• Infection Biology Research Lab
  Head: Sylvia Knapp
  Research Area: Endogenous modulators of inflammation; Macrophage plasticity in bacterial lung infections; Co- and Super-Infection
  Members:
  Sylvia Knapp
  Philipp Starkl
  Stefanie Widder
• Multi-Omics Microbial Systems
  Head: Stefanie Widder
  Members:
  Stefanie Widder

Grants

• CF microbiome for biomarker detection (2017)
  Source of Funding: FWF (Austrian Science Fund), Elise Richter
  Principal Investigator

Selected publications

1. Delogu, F. et al. (2023) ‘Forecasting the dynamics of a complex microbial community using integrated meta-omics’, Nature Ecology & Evolution. Available at: https://doi.org/10.1038/s41559-023-02241-3. Available at: http://dx.doi.org/.
2. Widder, S. et al. (2022) ‘Metagenomic sequencing reveals time, host, and body compartment-specific viral dynamics after lung transplantation’, Microbiome, 10(1). Available at: https://doi.org/10.1186/s40168-022-01244-9. Available at: http://dx.doi.org/.
3. Widder, S. et al. (2021) ‘Association of bacterial community types, functional microbial processes and lung disease in cystic fibrosis airways’, The ISME Journal, 16(4), pp. 905–914. Available at: https://doi.org/10.1038/s41396-021-01129-z. Available at: http://dx.doi.org/.
4. Widder, S. et al. (2016) ‘Challenges in microbial ecology: building predictive understanding of community function and dynamics’, The ISME Journal, 10(11), pp. 2557–2568. Available at: https://doi.org/10.1038/ismej.2016.45. Available at: http://dx.doi.org/.
5. Berry, D. & Widder, S., 2014. Deciphering microbial interactions and detecting keystone species with co-occurrence networks. Frontiers in Microbiology, 5. Available at: http://dx.doi.org/10.3389/fmicb.2014.00219.